A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization

Provides the ability to create interaction maps, discover CNV map domains (edges), gene annotate interactions, and create interactive visualizations of these CNV interaction maps.

Reference manual

install.packages("CNVScope")

3.7.7 by James Dalgleish, 2 months ago

https://github.com/jamesdalg/CNVScope/

Report a bug at https://github.com/jamesdalg/CNVScope/issues/

Browse source code at https://github.com/cran/CNVScope

Authors: James Dalgleish [aut, cre] (Alternate contact: james.dalgleish@keble.ox.ac.uk) , Yonghong Wang [aut] , Jack Zhu [aut] , Paul Meltzer [aut, sad]

Documentation: PDF Manual

BSD_3_clause + file LICENSE license

Imports tidyr, reshape2, magrittr, jointseg, shiny, RCurl, foreach, Matrix, OpenImageR, matrixStats, plyr, data.table, dplyr, doParallel, stringr, rtracklayer

Depends on ggplot2

Suggests knitr, remotes, pwr, ComplexHeatmap, rmarkdown, igraph, visNetwork, circlize, plotly, biomaRt, GenomicInteractions, InteractionSet, GenomicRanges, GenomicFeatures, IRanges, rslurm, shinythemes, shinycssloaders, DT, logging, heatmaply, S4Vectors, BiocManager, shinyjs, htmltools, htmlwidgets, GenomeInfoDb, BSgenome.Hsapiens.UCSC.hg19, tibble, smoothie

See at CRAN

CNVScope

A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization

Reference manual

R links

R homepage

Download R

Mailing lists

R documentation

R manuals

R FAQs

The R Journal

CRAN links

CRAN homepage

CRAN repository policy

Submit a package

METACRAN stuff

About METACRAN

At github

Report a bug