Microbe-Metabolite Interactions-Based Metabolic Profiles Predictor

Implements a computational framework to predict microbial community-based metabolic profiles with 'O2PLS' model. It provides procedures of model training and prediction. Paired microbiome and metabolome data are needed for modeling, and the trained model can be applied to predict metabolites of analogous environments using new microbial feature abundances.


MMINP (Microbe-Metabolite INteractions-based metabolic profiles Predictor)

Introduction

MMINP is a computational framework to predict microbial community-based metabolic profiles with O2-PLS model.

Reference manual

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install.packages("MMINP")

0.1.0 by Wenli Tang, 4 years ago


https://github.com/YuLab-SMU/MMINP


Report a bug at https://github.com/YuLab-SMU/MMINP/issues


Browse source code at https://github.com/cran/MMINP


Authors: Wenli Tang [aut, cre] , Guangchuang Yu [aut, ths]


Documentation:   PDF Manual  


GPL (>= 3.0) license


Imports magrittr, OmicsPLS, utils, stats

Suggests rmarkdown, knitr, prettydoc, testthat


See at CRAN