Nominating Quality Control Outliers in Genomic Profiling Studies

A method that analyzes quality control metrics from multi-sample genomic sequencing studies and nominates poor quality samples for exclusion. Per sample quality control data are transformed into z-scores and aggregated. The distribution of aggregated z-scores are modelled using parametric distributions. The parameters of the optimal model, selected either by goodness-of-fit statistics or user-designation, are used for outlier nomination. Two implementations of the Cosine Similarity Outlier Detection algorithm are provided with flexible parameters for dataset customization.


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install.packages("OmicsQC")

1.1.1 by Paul C. Boutros, 8 months ago


Browse source code at https://github.com/cran/OmicsQC


Authors: Anders Hugo Frelin [aut] , Helen Zhu [aut] , Paul C. Boutros [aut, cre] (ORCID:


Documentation:   PDF Manual  


GPL-2 license


Imports stats, utils, fitdistrplus, lsa, BoutrosLab.plotting.general

Suggests knitr, rmarkdown, kableExtra, dplyr, testthat


See at CRAN