Network Topology Parameter Analysis with Rarefaction

Calculate network topology parameters from Operational Taxonomic Unit (OTU) tables with customizable correlation thresholds, parallel processing options, and visualization capabilities including trend fitting, prediction of future sample sizes, and lag-1 autocorrelation (AR1) analysis. Methods are based on co-occurrence network construction via correlation thresholds and graph-theoretic metrics computed with 'igraph'.


Reference manual

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install.packages("SAFEMCN")

1.0.0 by Xiaotong Xu, 5 months ago


Browse source code at https://github.com/cran/SAFEMCN


Authors: Xiaotong Xu [aut, cre] , Yue Zheng [cph]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports igraph, Hmisc, parallel, ggplot2, grDevices, graphics, rlang, stats, utils

Suggests testthat


See at CRAN