'parsnip' Engines for Survival Models

Engines for survival models from the 'parsnip' package. These include parametric models (e.g., Jackson (2016) ), semi-parametric (e.g., Simon et al (2011) ), and tree-based models (e.g., Buehlmann and Hothorn (2007) ).

censored

censored is a parsnip extension package which provides engines for various models for censored regression and survival analysis.

Installation

You can install the released version of censored from CRAN with:

install.packages("censored")

And the development version from GitHub with:

# install.packages("pak")
pak::pak("tidymodels/censored")

Available models, engines, and prediction types

censored provides engines for the models in the following table. For examples, please see Fitting and Predicting with censored.

The time to event can be predicted with type = "time", the survival probability with type = "survival", the linear predictor with type = "linear_pred", the quantiles of the event time distribution with type = "quantile", and the hazard with type = "hazard".

model	engine	time	survival	linear_pred	raw	quantile	hazard
bag_tree	rpart	✔	✔	✖	✖	✖	✖
boost_tree	mboost	✔	✔	✔	✖	✖	✖
decision_tree	rpart	✔	✔	✖	✖	✖	✖
decision_tree	partykit	✔	✔	✖	✖	✖	✖
proportional_hazards	survival	✔	✔	✔	✖	✖	✖
proportional_hazards	glmnet	✔	✔	✔	✔	✖	✖
rand_forest	partykit	✔	✔	✖	✖	✖	✖
rand_forest	aorsf	✔	✔	✖	✖	✖	✖
survival_reg	survival	✔	✔	✔	✖	✔	✔
survival_reg	flexsurv	✔	✔	✔	✖	✔	✔
survival_reg	flexsurvspline	✔	✔	✔	✖	✔	✔

Contributing

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