Explain Gene Expression with Boolean Rules of Chromatin States

Infers Boolean rules among cis-regulatory regions using paired chromatin accessibility and gene expression data at bulk and single-cell levels. Links regulatory regions to target genes, providing insights into gene regulation mechanisms.


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install.packages("ocrRBBR")

0.1.0 by Seyed Amir Malekpour, 8 months ago


https://github.com/CompBioIPM/ocrRBBR


Browse source code at https://github.com/cran/ocrRBBR


Authors: Seyed Amir Malekpour [aut, cre]


Documentation:   PDF Manual  


GPL-3 license


Imports doParallel, dplyr, foreach, GenomeInfoDb, GenomicRanges, glmnet, Matrix, parallel, rtracklayer, S4Vectors, stats, utils


See at CRAN