Inference for Panel Partially Observed Markov Processes

Data analysis based on panel partially-observed Markov process (PanelPOMP) models. To implement such models, simulate them and fit them to panel data, 'panelPomp' extends some of the facilities provided for time series data by the 'pomp' package. Implemented methods include filtering (panel particle filtering) and maximum likelihood estimation (Panel Iterated Filtering) as proposed in Breto, Ionides and King (2020) "Panel Data Analysis via Mechanistic Models" .


panelPomp

an R package for inference on panel partially observed Markov processes

Project Status: Active -- The project has reached a stable, usable state and is being actively developed. CRAN Status Last CRAN release date R-CMD-check binary-build test-coveragecodecov

This package allows performing data analysis based on panel partially-observed Markov process (PanelPOMP) models. To implement such models, simulate them and fit them to panel data, 'panelPomp' extends some of the facilities provided for time series data by the 'pomp' package. Implemented methods include filtering (panel particle filtering) and maximum likelihood estimation (Panel Iterated Filtering) as proposed in Bretó, Ionides and King (2020) "Panel Data Analysis via Mechanistic Models" <doi:10.1080/01621459.2019.1604367>.

The latest version of the package can be installed from this GitHub source using devtools::install_github('panelPomp-org/panelPomp')

Installing the current CRAN version is also possible using install.packages("panelPomp")

Additional information is on the panelPomp website

Related packages:

Reference manual

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install.packages("panelPomp")

1.8.0.0 by Jesse Wheeler, 3 months ago


Browse source code at https://github.com/cran/panelPomp


Authors: Carles Breto [aut] , Edward L. Ionides [aut] (ORCID: , Aaron A. King [aut] , Jesse Wheeler [aut, cre] (ORCID: , Aaron Abkemeier [ctb]


Documentation:   PDF Manual  


GPL-3 license


Imports methods

Depends on pomp

Suggests knitr, rmarkdown, bookdown


See at CRAN