Phylogenetic Pairwise Contrasts

A phylogenetic comparative method for finding associations between biological traits and molecular evolutionary rates. The method samples pairs from a phylogeny such that each pair has non-overlapping edge paths, and can therefore be treated as statistically independent observations. Linear regression is performed on the pair contrasts. This approach is similar to phylogenetically independent contrasts (PIC) but without reconstructing the traits at internal nodes, and is better suited for finding trait-rate associations than phylogenetic generalised least squares (PGLS). Refer to Douglas and Bromham (2026) for further details.


Reference manual

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install.packages("phylowise")

0.0.1 by Jordan Douglas, 2 months ago


https://github.com/jordandouglas/phylowise


Browse source code at https://github.com/cran/phylowise


Authors: Jordan Douglas [aut, cre] , Lindell Bromham [aut]


Documentation:   PDF Manual  


GPL (>= 3) license


Imports Rcpp

Depends on ape, BMA, phylotate

Linking to Rcpp


See at CRAN