Identification of 2n and 3n Samples from Amplicon Sequencing Data

Uses read counts for biallelic single nucleotide polymorphisms (SNPs) to compare the likelihoods for the observed read counts given that a sample is either diploid or triploid. It allows parameters to be specified to account for sequencing error rates and allelic bias. For details of the algorithm, please see Delomas (2019) .


Reference manual

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install.packages("tripsAndDipR")

0.1.0 by Thomas Delomas, 7 years ago


https://github.com/delomast/tripsAndDipR


Report a bug at https://github.com/delomast/tripsAndDipR/issues


Browse source code at https://github.com/cran/tripsAndDipR


Authors: Thomas Delomas [aut, cre]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports stats


See at CRAN